Downloads

Code

The current release is PASQUAL v1.0.

Data

Simulated data sets

s_suis.fa.bz2

h_sapien_chr22_minusN.fa.bz2

d_rerio_chr6_minusN.fa.bz2

Real data sets

Escherichia coli

S. Typhimurium

Caenorhabditis elegans

Reads generated from the sequences

gen_reads-0.9.tgz can be used for generating reads from the sequences. For example, to generate reads for sequence s_suis.fa with coverage 30 (-c30) and read length 100 (-l100), one can issue the following command,

$> gen_reads -i s_suis.fa -o s_suis_c30_l100.fa -c30 -l100.fa

PASQUAL