Introductory Material

A. Apostolico and M. Crochemore String Pattern Matching for a Deluge Survival Kit,
Handbook of Massive Data Sets, J. Abello et al, Eds. Kluver Acad. Publishers, Kluver Acad. Publishers, pp. 151--194 2002.

A. Apostolico General Pattern Matching, Handbook of Algorithms and Theory of Computation,
M.J. Atallah, ed., CRC Press Ch. 13, pp. 1--22 (1999).

A. Apostolico Of Maps Bigger than the Empire, Keynote, SPIRE2001, IEEE Press (2001)

A. Apostolico Pattern Discovery and the Algorithmics of Surprise , Artificial Intelligence and Heuristic Methods for Bioinformatics, (P. Frasconi and R. Shamir, eds.)
IOS Press, 111--127 (2003). </a>

A. Apostolico Pattern Discovery in the Crib of Procrustes,
Imagination and Rigor, Essays on Eduardo R.
Caianiello's Scientific Heritage Ten Years after his Death, S. Termini, ed.,
Springer-Verlag, 2006


Specialized Material

A. Apostolico and G. Bejerano Optimal Amnesic Probabilistic Automata, or How to Learn and
Classify Proteins in linear Time and Space, RECOMB 2000 and Journal of Computational Biology,
7(3/4):381--393, 2000. </a>

A.Apostolico, M.E.Bock, S.Lonardi, X.Xu, Efficient Detection of Unusual Words,

Journal of Computational Biology, vol.7, no.1/2, 2000. </a>

A.Apostolico, F.Gong, S.Lonardi, Verbumculus and the Discovery of Unusual Words,

Journal of Computer and Science Technology (special issue in Bioinformatics),

vol.19, no.1, pp.22-41, 2004. </a>

A. Apostolico, L. Parida. Incremental Paradigms of Motif Discovery,
Journal of Computational Biology 11:1, 15--25 (2004).

A. Apostolico, M.E. Bock and S. Lonardi. Monotony of Surprise and Large Scale Quest for Unusual Words, Journal of Computational Biology, 10, 3-4, 283-311 (2003). </a>

A. Apostolico, C. Pizzi. Monotone Scoring of Patterns with Mismatches,
Proceedings of the 4th Workshop on Algorithms in Bioinformatics, Bergen, Norway, Springer Verlag
LNCS 3240, 87-98, (2004)

A.Apostolico, M.E.Bock, S.Lonardi, Linear Global Detectors of Redundant and Rare Substrings, Proceeding of the IEEE Data Compression Conference (DCC'99), pp.168-177, Snowbird, Utah, March 29-31, 1999.

A. Apostolico, M.J. Atallah.
Compact Recognizers of Episode Sequences,
Information and Computation, 174, pp. 180-192 (2002).

A. Amir, A. Apostolico, G. Landau and G. Satta.
Efficient Text Fingerprinting Via Parikh Mapping, Journal of Discrete Algorithms,
1, 5-6, pp. 409-421 (2003).

A. Apostolico, M. Comin and L. Parida.
Conservative Extraction of Overrepresented Extensible Motifs, Proceedings of
ISMB 05, Intelligent Systems for Molecular Biology, Detroit, Mi., July 2005.

A. Apostolico, M. Comin and L. Parida.
Motifs in Ziv-Lempel-Welch Clef, Proceedings of IEEE DCC Data Compression Conference,
pp. 72—81 (2004).

A. Apostolico, C. Pizzi and G. Satta.
Optimal Discovery of Subword Associations in Strings, Proceedings of the 7th Discovery Science Conference, Springer-Verlag LNAI 3245, pp. 270-277 (2004).

A. Apostolico, Of Lempel-Ziv-Welch Parses with Refillable Gaps,
Proceedings of IEEE DCC Data Compression Conference, pp. 87-96 (2005).

A. Apostolico, P.L. Erdos, M. Lewenstein, Parameterized Matching with Mismatches, Journal of Discrete Algorithms 5, pp. 135 – 140 (2007).

A. Apostolico, R. Giancarlo, Periodicity and Repetitions in Parameterized Strings, Discrete Applied Mathematics 156, pp. 1389 – 1398 (2008).

A. Apostolico, L. Parida, S.E. Rombo, Motif patterns in 2D, Theoretical Computer Science 390, pp. 40-55 (2008).

A. Apostolico, O. Denas Sequence Distances Based on Exhaustive Substring Composition, Keynote.
Proceedings of IEEE Information Theory Workshop, pp. 87-96 (2008).