David A. Bader Executive Director of High-Performance Computing Computational Science and Engineering Division College of Computing Center for the Study of Systems Biology Center for Bioinformatics and Computatonal Genomics

Petascale Computing: Algorithms and Applications David A. Bader (Ed.), Chapman & Hall/CRC Computational Science Series, © 2007. ISBN-10: 1584889098 ISBN-13: 978-1584889090

Current National Science Foundation Projects:

• Understanding Whole-genome Evolution through Petascale Simulation,
  Accelerating Discovery in Science and Engineering Through Petascale Simulations and Analysis (PetaApps) Programm, (OCI-0904461)
• Establishing a Center for Hybrid Multicore Productivity Research (CHMPR),
  Industry/University Cooperative Research Centers (I/UCRC) Program. (IIP-0934114)
• Development of a Research Infrastructure,
  Computing Research Infrastructure (CRI) Program. (CNS-0708307)

Recent National Science Foundation Projects:

• Establishing an I/UCRC Center for Multicore Productivity Research (CMPR),
  Industry/University Cooperative Research Centers (I/UCRC) Program. (IIP-0708307)
• A Framework for Optimizing Scientific Applications,
  Computer Systems Research (CSR) Program. (CNS-0614915)
• Workshop Proposal: Petascale Computing in the Biological Sciences,
  Directorate of Biological Sciences. (DBI-0632517)
• CAREER: High-Performance Algorithms for Scientific Applications,
  Faculty Early Career Development (CAREER) Program. (CCF-0611589)
• Building the Tree of Life -- A National Resource for Phyloinformatics and Computational Phylogenetics,
  (with PI: B.M.E. Moret (U New Mexico); coPI's: D.A. Bader (U New Mexico), F. Berman (UC San Diego), P. Bourne (UC San Diego), M. Donoghue (Yale), D.M. Hillis (U Texas-Austin), W. Hunt (U Texas-Austin), J. Kim (U Pennsylvania), P. Lewis (U Connecticut), D. Maddison (U Arizona), W. Maddison (U Arizona), D. Miranker (U Texas-Austin), B. Mischler (UC Berkeley), L. Meyers (U Texas-Austin), E. Myers (UC Berkeley), S. Rao (UC Berkeley), S. Russell (UC Berkeley), D. Swofford (Florida State U), T. Warnow (U Texas-Austin), W. Wheeler (American Museum of Natural History), T. Williams (U New Mexico)); Information Technology Research (ITR) Program. (EF/BIO 03-31654).
• Acquisition of a High Performance Shared-Memory Computer for Computational Science and Engineering at the University of New Mexico, (with PI: H. Guo; coPI's: D.A. Bader, S. Atlas, T. Oprea, and M. Ingber); Major Research Infrastructure (MRI) Program. (DBI 04-20513).
• Reconstructing Complex Evolutionary Histories, (with B.M.E. Moret (New Mexico), T. Warnow (Texas-Austin), R. Jansen (Texas-Austin), and R. Linder (Texas-Austin)), Information Technology Research (ITR) Program. (EIA 01-21377)
• Comparative Chloroplast Genomics: Integrating Computational Methods, Molecular Evolution, and Phylogeny, (with R. Jansen (Texas-Austin), T. Warnow (Texas-Austin), L. Raubeson (Central Wash.), B.M.E. Moret (New Mexico), C. dePamphilis (Penn State), W. Miller (Penn State), and J. Boore (DOE Joint Genome Inst.) ), Biocomplexity in the Environment Program. (DEB 01-20709)
• Computing Optimal Phylogenetic Trees under Genome Rearrangement Metrics, (with R. Jansen and B.M.E. Moret), Information Technology Research (ITR) Program. (EIA 01-13095)

Current Collaborations:

• Sony-Toshiba-IBM Center of Competence for the Cell Broadband Engine
• DoD Center for Adaptive Supercomputing Software - Multithreaded Architectures (CASS-MT)
• Microsoft Research: Parallel and Concurrent Computing
• Productive, Easy-to-Use, Reliable Computing Systems,
  IBM / DARPA, High Productivity Computing Systems Project.
• NSF Cyberinfrastructure for Phylogenetic Research (CIPRes) project
• Experimental Algorithmics
• PhyloLab, University of Texas at Austin

Recent Honors and Awards:

• National Science Foundation CAREER Award.
• Georgia Tech College of Computing 2007 Dean's Award.
• 2008 IBM Shared University Research Award
• 2006 IBM Faculty Fellowship Award
• 2008 NVIDIA Professor Partnership Award
• 2006-7 Microsoft Research award
• UNM Regents' Lecturer.
• IEEE Computer Society Distinguished Speaker.
• ECE Lawton-Ellis Award for Excellence in Research, Teaching, and Community Service, 2002.
• UNM School of Engineering Junior Research Excellence Award, 2000.
• ECE Outstanding Researcher of the Year, 2000 (First Recipient of this Award).
• IEEE & Sigma Xi 2000 Young Outstanding Engineer Award.

Recent Service:

• Advisory Council, Internet2 (2007-)
• Chair, IEEE Computer Society Technical Committee on Parallel Processing (TCPP), 2003--2007.
• Associate Editor, The IEEE Transactions on Parallel and Distributed Systems (TPDS).
• Associate Editor, The ACM Journal of Experimental Algorithmics.
• Associate Editor, Parallel Computing.
• Associate (Founding) Editor, The IEEE Distributed Systems Online.
• Member of the Founding Editorial Board, The International Journal of High Performance Computing and Networking.
• Steering Committee Member:
  • The IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2002--present.
  • The IEEE International Conference on High Performance Computing (HiPC), 2002--present.
  • The International Workshop on Efficient and Experimental Algorithms (WEA), 2005--present.
• General Co-Chair:
  • The 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2005), Denver, CO.
  • The 18th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2004), Santa Fe, NM.
• Co-Chair:
  • IEEE International Workshop on High Performance Computational Biology (HiCOMB) [2002-7].
  • International Workshop on Parallel Bio-Computing (PBC) [2005-7].
• Program Chair:
  • The 12th IEEE International Conference on High Performance Computing (HiPC 2005).
• Program Vice Chair:
  • The 20th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2006).
  • The 35th International Conference on Parallel Processing (ICPP 2006).

Recent Program Committee Memberships:

• The International Parallel and Distributed Processing Symposium (IPDPS 2006, 2007, and 2008)
• The International Conference on High Performance Computing (HiPC 2006)
• Parallel Computing (ParCo 2007)
• The International Conference on Distributed Computing Systems (ICDCS 2006 and 2007)
• The International Heterogeneous Computing Workshop (HCW 2003, 2004, 2005, 2006, 2007, and 2008)
• The IEEE and ACM Supercomputing Conference (SC2003, SC2005, SC2006, and SC2007)
• The International Conference on Parallel Processing (ICPP 2003, 2004, and 2005)
• IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2005, 2006, 2007, and 2008)
• The IEEE International Conference on Cluster Computing (Cluster 2003, 2004, 2005, and 2006).
• The International Conference on Computational Science (ICCS 2003, 2004, and 2005)

Teaching:

• Recently taught courses:
• Computational Science and Engineering Algorithms, CSE 6140, Fall 2008
• High Performance Computing, CSE 6220, Spring 2008
• Computational Science and Engineering Algorithms, CSE 6140, Fall 2007
• Multicore and GPU Programming for Video Games, Fall 2007
• High-Performance Computing Seminar, Spring 2007
• Multicore Computing, CS 8803-MC, CS 4803-MC, Spring 2007
• Discrete Algorithms in Computational Science and Engineering, CS 8803-DA, CS 4803-DA, Fall 2006
• Computability, Algorithms, and Complexity, CS 6505, Spring 2006


• Older courses:
• Parallel Algorithms
• Advanced Computer Architecture
• Advanced Parallel Algorithms
• Advanced Cache-Aware Algorithms
• Computer Design
• Foundations of Computing
• Introduction to Parallel Processing

	My curriculum vitæ
	Recent distinguished visitors hosted by our lab