Concettina Guerra
College of Computing, Georgia Institute of Technology
email: guerra@cc.gatech.edu
address: Tech Square Research Building 85 Fifth Street NW Atlanta, GA 30308.
tel. 404-3856347
Biographical Info
Research
Publications
C. Guerra, S. Joshi, Y. Lu, F. Palini, U. Ferraro Petrillo, and J. Rossignac (2020)
Rank-similarity measures for comparing gene
prioritizations: A case study in autism
Journal of
Computational Biology, (to appear).
X. Zhou, A. Amir, G. Landau, J. Rossignac, and C. Guerra (2018)
EDoP Distance Between Sets of Incomplete Permutations: Application to Bacteria Classification Based on Gene Order
Journal of
Computational Biology, 25:11.
C. Guerra, U.F. Petrillo,
and C. Pizzi (2017) A new distributed alignment-free approach to compare whole proteomes
Theoretical Computer Science, 698, 25, 100-112.
A. Apostolico, C. Guerra, G.
Landau, and C. Pizzi (2016) Sequence Similarity Measures Based on Bounded Hamming Distance
Theoretical Computer Science, doi:10.1016/j.tcs.2016.01.023.
.
C. Guerra (2015)
On the Interconnection of Protein Complexes: Inter-complex Hubs and Their Conservation in
Saccharomyces Cerevisiae and Homo Sapiens Networks.
Int. Journal of Bioinformatics Research
and Applications, 11, 6.
I. Arisi, M. D Onofrio, R. Brandi, A. Cattaneo, P. Bertolazzi, F. Cumbo, G. Felici, C. Guerra (2015)
Time dynamics of protein complexes in the AD11 transgenic mouse model for Alzheimer's disease like pathology
BMC Neuroscience, 16:28.
A. Apostolico, C. Guerra, C. Pizzi (2014)
Alignment Free Sequence Similarity with Bounded Hamming Distance
Data Compression Conference (DCC), 183-192.
P. Bertolazzi, C. Guerra, G. Liuzzi (2014)
Predicting protein-ligand and protein-peptide interfaces
European Physical Journal Plus EPJ, 129-132.
P. Bertolazzi,
M.E. Bock, C. Guerra (2013) Functional and structural characterization
of hub proteins in protein-protein interaction networks.
Biotechnology
Advances, 31, 2, 274-286.
Ciriello, M. Mina, P. H. Guzzi, M. Cannataro, C. Guerra (2012) AlignNemo: A Local Network Alignment Method to Integrate Homology and Topology. PlosOne. 7(6): e38107. doi:10.1371/journal.pone.0038107
H. Guzzi, M. Mina, C. Guerra, M. Cannataro (2011) Semantic Similarity analysis of protein data: Assessment with biological features and Issues.
Briefings in Bioinformatics. doi: 10.1093/bib/bbr066.
G. Ciriello, C. Gallina, Guerra C (2010). Analysis of interactions between ribosomal proteins and RNA structural motifs.
BMC Bioinformatics, vol. 11 (Suppl 1):S41, ISSN: 1471-2105
P. Bertolazzi, Guerra C, G. Liuzzi (2010). A global optimization algorithm for protein surface alignment.
BMC Bioinformatics. 11, 488, ISSN: 1471-2105, doi: 10.1186/1471-2105-11-488M.
Comin, F. Dellaert, C. Guerra (2009) Binding Balls: Fast detection of Binding Sites using a property of Spherical Fourier Transform.
Journal of Computational Biology, 16, 11.
S. Angaran,
M.E. Bock, C. Garutti and C. Guerra (2009) MolLoc: a
web tool for the local structural alignment of molecular
su
rfaces. Nucleic Acids Research, Web Server Issue,
doi: 10.1093/nar/gkp405.
A. Apostolico, G. Ciriello, C.
Guerra, C. Heitsch, C. Hsiao, L. Williams (2009)
Finding 3D Motifs in Ribosomal RNA Structures.
Nucleic Acids Research, doi: 10.1093/nar/gkn1044.
M. Comin, C. Guerra, G. Zanotti, (2008). Mining Over-Represented 3D Patterns of Secondary Structures in Proteins. Journal of Bioinformatics and Computational Biology. 6, 6, 1067-1087.
M. Comin, C. Guerra, G. Zanotti (2008) Invariant geometric properties of secondary structure elements in proteins, in "Biological data mining", Chapman & Hall/CRC Press.
M.E. Bock, C. Garutti and C. Guerra (2008). Cavity detection and matching for binding site recognition.Theoretical Computer Science, doi:10.1016/j.tcs.2008.08.018
G. Ciriello, C. Guerra (2008) A
Review on Models and Algorithms for Motif Discovery in
Protein-Protein Interaction
Network, Briefings in Functional Genomics and
Proteomics, DOI 10.1093/bfgp/eln015, 2008.
M.E. Bock, C. Garutti and C. Guerra (2007). Discovery of Similar Regions on Protein Surfaces, Journal of Computational Biology, 14, 3, 285-299.