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Biochem course materials List of Lecture Summaries-Notes (Biochemistry) MIT OpenCourseWare Biology 7.51 Graduate Biochemistry, Fall 2001 Home MIT OpenCourseWare Biology 7.88J Protein Folding Problem, Fall 2003 Home MIT OpenCourseWare Biology 7.91J Foundations of Computational and Systems Biology, Spring 200 MIT OpenCourseWare Biology 7.91J Foundations of Computational and Systems Biology, Spring 2004 Home MIT OpenCourseWare Biology 7.88J Protein Folding Problem, Fall 2003 Lecture Notes
Bioinfo and related 123 Genomics - Sequence analysis, data mining, gene hunting, genomic mining, protein analysis, 123 Genomics - Sequence analysis, data mining, gene hunting, genomic mining, protein analysis, structure prediction Bio Courses at CMU Bioinformatics Courses Bioinformatics databases and tools Bioinformatics Methods in Research BMI 214 - CS 274 (Spring 2005) CSE 182 Biological Data Analysis Home Page CSE 549 - Computational Biology DNA Microarray Informatics Essential Perl Free Medline on the Web Genomics and Genetic Epidemiology Webcast Intelligent Systems and Bioinformatics Laboratory MIT OpenCourseWare Electrical Engineering and Computer Science 6.092 Bioinformatics and Proteomics, January (IAP) 2005 Le MIT OpenCourseWare Health Sciences and Technology HST.950J Medical Computing, Spring 2003 Lecture Notes Perl Programming Course for Bioinformatics and Internet Perl tutorial Start SMART - Simple Modular Architecture Research Tool SPAF SWBIC - Bioinformatics Technion - Laboratory of Computational Biology Welcome to Collabrative Curation
Bioinfo companies Accelrys Ariadne Genomics Tools for Systems Biology Companies Bioinformatics Data Mining, Text Mining and Web Mining Software ECSDTool Business Intelligence Toolset Open Directory - Science Biology Bioinformatics Companies
BioNLP ACL-02 Workshop on NLP in the Biomedical Domain Alex Morgan's Homepage - BioNLP Resources Bioinformatics 7791 Projects in Bioinformatics Natural Language Processing BIONLP.ORG -- Natural language processing of biology text http--sky.fit.qut.edu.au-~sahama-BioNLP-bionlp-bionlp.html Stanford NLP Group
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Conferences 4th International Semantic Web Conference . ISWC 2005 . Galway, Ireland AAAI-06 Twenty-First National Conference on Artificial Intelligence Biolink 2005 - Accepted Posters DMKD 2003 IngentaConnect Publication Briefings in Bioinformatics LREC CONFERENCE Tenth International Database Engineering The 5th International Semantic Web The Automated Function Prediction SIG - The Second Automated Function Prediction Meeting
Databases Databases @ CMU Digital Library Bibliography Gautam Das databse and info. ret Getting Started with CGI Programming in C HSQLDB LecNotes Object-Oriented and Database Programming for Bioinformatics and Internet PgFoundry Welcome Practical A Simple Database Praveen Madiraju Home Page Running & Installing PostgreSQL On Native Win32 FAQ
Eukaryotics Genetics Eukaryotic Molecular Genetics at UMBC
fun Dilbert.com - The Official Dilbert Website by Scott Adams - Dilbert, Dogbert and Coworkers! Piled Higher and Deeper
information extraction Columbia's Snowball and QXtract Projects CS 349 Data Mining, Search, and the World Wide Web Data Mining, Text Mining and Web Mining Software ECT 584 - Web Data Mining - DePaul University Google Web APIs - Reference IR and IE on the Web - PhD and MSc dissertations KnowItAll Links Statistical NLP - corpus-based computational linguistics resources UT ML Group Bioinformatics World Wide Knowledge Base (Web-KB) project
Machine Learning 10-701 and 15-781 Machine Learning, 2003 15-381 Artificial Intelligence, Spring 2004 CS 4671 & 7641 Machine Learning Machine Learning textbook slides Machine Learning vasant honavar MIT OpenCourseWare Electrical Engineering and Computer Science 6.867 Machine Learning, Fall 2 MIT OpenCourseWare Electrical Engineering and Computer Science 6.867 Machine Learning, Fall 2002 Home MIT OpenCourseWare Electrical Engineering and Computer Science 6.867 Machine Learning, Fall 2002 Lecture Notes Statistical Data Mining Tutorials
medline BioMed Central Full text Tools for loading MEDLINE into a local relational database BioText Software
microarray Microarray Core Seminars University of Ulster - Bioinformatics Research Group List of Publications
Mining Life Sciences Mining Papers Recent Relevant Papers and review - good!
Mining and Informatics BioText Project Homepage ChengXiang Zhai - Home Page Course MSCS 282 Text Mining and NLP CS 349 Data Mining, Search, and the World Wide Web CS 431 Architecture of Web Information Systems, Spr. 2004 CS-INFO 630 Representing and Accessing Digital Information CS276A Course - Text Mining(Fall 2004) Data Mining - Old List Of Data Mining Software Software flamenco search home Glasgow IDOM - IR linguistic utilities http--sifaka.cs.uiuc.edu-course-598cxz05s-info.html Human Language Technologies 15-482-11-682 Information Retrieval Links Information Vault Midas Home Page Statistical Data Mining Tutorials Syllabus for Web Search Engines Text Mining - Articles, Tutorials, Templates, Checklists, Jobs and more Text Mining Search and Navigation Research - Home UT ML Group Text Data Mining Web Search and Mining
news GTRESEARCHNEWS Slashdot News for nerds, stuff that matters TechWeb The Business Technology Network
NLP 600.465 - Natural Language Processing - JHU CS AltaVista - Babel Fish Translation CS 224N - Ling 237 CS674 Natural Language Processing EE 6669 Homepage -- Lecture Notes Foundations of Statistical Natural Language Processing Hinrich Sch�tze Human Language Technologies 15-482-11-682 Index of -reports-tr9-BidiReferenceJava ISI's Natural Language Group JWNL Overview lfg Linguist List - Web Resource Listings Main Page - Mallet MIT OpenCourseWare Brain and Cognitive Sciences 9.591J Language Processing, Fall 2004 Lecture Notes MIT OpenCourseWare Electrical Engineering and Computer Science 6.881 Natural Language Processing, Fall 2004 Home MIT OpenCourseWare Linguistics and Philosophy 24.973 Advanced Semantics, Spring 2005 Home Modal Logic Natural Language Processing - EML Research gGmbH Natural Language Processing Techniques in Prolog Natural Language Processing, Spring Term 2006 Natural Language Processing NLP and Speech Software NLP, Sheffield - home Notes Ed Loper NLP OpenCyc.org PASCAL Programmes - entailment People of the Infolab Group Precise Understanding of Language by Computers Speech and Language Processing Stanford NLP Group Statistical Natural Language Processing Models and Methods (CS775) Statistical NLP - corpus-based computational linguistics resources Temporal Logic Text Mining Resources The Natural Language Processing Dictionary TyRuBa -- Logic Meta Programming for Java u of chicago course Untitled Document UAX #9 The Bidirectional Algorithm Web Frequency Indexer Web Information Retrieval - Natural Language Processing Group (WING) - NLP - IR resource page on aye WING - Resources (RPNLPIR)
perl, CGI and server Apache Server Frequently Asked Questions Beginning Perl Tutorials comnex.NET - cWebmail 2001 - free POP3 and SMTP perl and linux tool for download How do I send an email with Perl (including an attachment) MailSender module woes Perl CGI Programming FAQ Perl Programming faq Rex Swain's HTMLified Perl 5 Reference Guide search.cpan.org MailSendmail v. 0.79 - Simple platform independent mailer SendMail for Windows Home Page The cgi-lib.pl Home Page
php asp perl xml mysql Apache Download Mirrors - The Apache Software Foundation ASP scripts PHP CGI Perl JavaScrips Computer Tutorials, JSP Programs List W DevPapers - Main page Dojo - DojoToolkit.org Enterprise Java Community Introduction to the Spring Framework Fun with XML Hotscripts.com CGI and Perl Books http--www.zend.com-zend-art-intro.php IT Research and White Papers from IT Vendors Latest Releases Linux Tutorial Java Servlets,JSP,Jakarta-Tomcat,JDBC,PostgreSQL,MySQL and Linux MySQL Downloads PerfectXML.com Learn to use XML in your applications PHP scripts generator for MySQL databases PHP SimpleXML functions - Manual PHPMaker Simple MEDLINE SourceForge.net Software Map visual basic, vb, active server pages (ASP),java, javscript,c, c++, c__ , vbscript,active serve visual basic, vb, active server pages (ASP),java, javscript,c, c++, c__ , vbscript,active server pages, ASP, vbscript,SQL, data XML4LIB Resources [Chapter 20] Web Automation
Programming BioLisp.org Coding4Fun Using the Amazon.com Web Service Eclipse.org home Kevin Rosenberg Practical Common Lisp The Java[tm] Tutorial Visual C# Ximbiot cvshome.org Archive (unmaintained) CVS Product Overview
Randomized Algorithms Burns Statistics -- Intro to Genetic Algorithms Comparing Genetic and Other Search Algorithms EO Evolutionary Computation Framework Evolving Artifical Neural Networks with Genetic Algorithms a Thesis Hitch-Hiker's Guide to Evolutionary Computation http--www.cs.hmc.edu-~roy-proj- NNUGA - Neural Network Using Genetic Algorithms Simple Simulated Annealing Code Topic areas-genetic-ga-systems-
Search Engines Search Engine Research Papers SIMS 141 Search Engines Technology, Society, and Business Web Search and Mining
sem web tools (www.ai.mit.edu) cacore CO-ODE Resources CS 431 Architecture of Web Information Systems, Spr. 2004 DC-dot FungalWeb Ontology, the Semantic Web, Intelligent Systems for Fungal Genomics http--www.intellidimension.com- KAON REVERSE � KAON - The KArlsruhe ONtology and Semantic Web tool suite Knowledge Web NoE (FP6-507482) LSDIS SAI Mindswap Homepage Partition-Based Logical Reasoning seek-projects- Soumen Chakrabarti SWeDE - SWeDE 2.0.2 WebServices - Axis
Semantics NLP Foundations of Statistical Natural Language Processing Notes Ed Loper NLP Stanford NLP Group parser Statistical NLP - corpus-based computational linguistics resources The Natural Language Processing Dictionary alphaWorks Emerging Topic Semantics Jena Tutorial - RDQL O'Reilly Network Top Ten FAQs for Web Services Primer - Getting into the semantic web and RDF using N3 RDF Vocabulary Description Language 1.0 RDF Schema Resource Description Framework (RDF) Model and Syntax Specification W3C Semantic Web Web Service Definition Language (WSDL)
Software CLAWS part-of-speech tagger Proteus Project - Apple Pie Parser (Corpus based Parser) search.cpan.org Ted Pedersen - WordNet-Similarity [Dot.Kom Project]
SVM - Yann GUERMEUR HOME PAGE msvm http--www.idiap.ch-~bengio-lectures-tex_svm.pdf jSVM - Java Classification Engine LIBSVM LS-SVMlab Seminar SVM in bioinformatics SVM Page of Keerthi's Group at NUS, Singapore SVM-Light Support Vector Machine SVM-Multiclass Multi-Class Support Vector Machine Yoonkyung Lee msvm
Misc All about kernels Table of Contents Apache Lucene - Overview - Apache Lucene Ariadne Genomics Tools for Systems Biology Bioalgorithms Info PowerPoint slides BioMint Public Area Bloglines My Feeds Calculus I (Math 2413) - Review - Review Common Graphs CBCL - Courses cephas.net projects karakoram Christina Leslie's home page CMU Text Learning Group Columbia Gene and Protein Synonym Server Columbia's Snowball and QXtract Projects Computational Biology Research Projects Computer Science Branch NLM CS 661 - Machine Learning (Salzberg) CS276A Course Syllabus (Fall 2004) Text Mining CSB2005 CSR - Meeting Roster - BDMA cwm - a general purpose data processor for the semantic web DAML.org Damn cool illusion David Madigan's Papers David Madigan Development and Management of Digital Information Services in Enterprises Dr. Dobb's Journal Edinburgh Question-Answering Reading Group EE6882 SVIA Paper List Extramural Programs Awards Frequently Asked Questions on W3C's Web Ontology Language (OWL) FY2004 Awards nlm ro1 grants Gene Ontology Database Downloads Georgia Tech Library Databases Georgia Tech � Research Horizons magazine � Winter 2001 GO Database Perl Module GO Example Queries Google Search GAPSCORE Finding Gene and Protein Names One Word at a Time. Google Harvesting Model heart-disease Home page for Robert Stockton perl http--engr.smu.edu-~saad-courses-cse8354-lectures-lecture10.pdf http--www.cse.msu.edu-~cse881- http--www.getopt.org-luke- IBM Ontology Management System IBM Research IBM Research Knowledge Discovery & Data Mining IBM Research - Sougata Mukherjea IBM Software - DB2 Information Integrator for Content - Information mining services Implementing Full Text Indexing with PostgreSQL Index of -afs-cs.cmu.edu-project-ai-repository-ai Index of -dev-database-archive-latest Index of -~soumen-doc-www2004 QA Indiatimes - ePaper Information Management Principles Internships Java Advanced Imaging API Jena2 Ju Rao's Homepage Free Computer Books Lecture Notes and Assigned Readings nlp Limit Cycles and Chaos Machine Learning Courses Main Page - Wikipedia, the free encyclopedia Managing Gigabytes - Second Edition Errata Mathematical Background MATLAB on Athena (AC-71) Nat's Home Page NEUStore A Simple Java Package for the Construction of Disk-based, Paginated, and Buffered Indi NEUStore A Simple Java Package for the Construction of Disk-based, Paginated, and Buffered Indices Official Java Programming Documentation Quick Reference Guide ols-master Online Courses Open Source Crawlers in Java OpenFTS Open Source Full Text Search Engine OpenFTS Primer Overview (Java 2 Platform SE v1.4.2) OWL ontologies OWL Web Ontology Language Overview Papers on NLP in Bioinformatics PARC Internship Home Perl Basics Peter@Norvig.com PgFoundry Project Filelist Piled Higher and Deeper PostgreSQL Documentation Manuals PostgreSQL 7.2 pg_passwd PostgreSQL FTP Browser Prof. Dr. Steffen Staab - ISWeb - Information Systems and Semantic Web - Institute for Computer Science - University of Koblenz PSB 2005 Online Proceedings PSB 2006 Call for Participation Pubsearch Pubfetch Pubtrack Re MedlineParser to parse and load MEDLINE into a RDBMS Reinforcement Learning Toolbox Resource Description Framework (RDF) - W3C Semantic Web Activity Resources for Studying English Lexicon, Semantics, and Text Structures Online Resources for Studying English Syntax Online Sample NLM Data School of Library, Archival and Information Studies -- UBC Semantic Web and Resource Description Framework Hints and Tips Single-Link, Complete-Link & Average-Link Clustering SolutionIP Services SourceForge.net Welcome Stanford NLP Group parser Swoogle Text Mining Search and Navigation Research - Home Textpresso The Clever Project The Gist of the GiST The Semantic Web An Introduction tsearch-v2-intro Tsearch2 - full text extension for PostgreSQL UIMA Project Homepage UMass Amherst Cataloging Dept. - Classification, etc. umls Untangling Text Data Mining Value Iteration Demonstration Vasileios Hatzivassiloglou Vijay Narayanasamy see the projs he's worked on W3C Semantic Web Welcome to INFOMINE Scholarly Internet Resource Collections William Stafford Noble