PArallel SeQUence AssembLer, a Parallel de Novo Genome Sequence Assembler, is designed for shared memory parallelism, using OpenMP due to its good tradeoff between performance and programmer productivity.
Xing Liu, Pushkar R. Pande, Henning Meyerhenke, and David A. Bader, ''PASQUAL: Parallel Techniques for Next Generation Genome Sequence Assembly,'' IEEE Transactions on Parallel and Distributed Systems, vol. 24, no. 5, pp. 977-986, May, 2013.
A parallel SpMV code for Intel Xeon Phi using the ELLPACK Sparse Block (ESB) Format. The ESB format has been used in the Intel MKL SpMV Format Prototype Package.
Xing Liu, Mikhail Smelyanskiy, Edmond Chow, and Pradeep Dubey, ''Efficient Sparse Matrix-Vector Multiplication on x86-based Many-core Processors,'' In 27th International Conference on Supercomputing (ICS), Eugene, Oregon, June 10-14, 2013.