Welcome to My Homepage

 

My name is Zhaoming Yin, I am third year Phd student at Georgia Institute of Technology. My supervisor is Prof. David A. Bader. I got my Bachelor of Engineering in Software Engineering from Hunan University in 2007, and My master of Engineering in Software Engineering from Peking University in 2010. I passed my Ph.D qualify exam on Mar 27th 2012. I passed my PhD thesis proposal on April 26th, here is my proposal write up [pdf].

My research interests include: High Performance Computing, Bioinformatics, Large Scale Graph Analysis and Nature Language Processing, currently I am working on the project PETA-APPS: Petascale Simulation for Understanding Whole-Genome Evolution.

I like playing basketball, playing guitar, running, singing. My dream is traveling around the world and one day the program I write or the algorithm I designed can change the world as well as my life :) a little bit.

Courses

 
Fall 2010
CSE6001: Intro-Comp Sci & Engr
CSE6740: Computational Data Analy, Guy Lebanon
CSE6140: Comp Sci&Engr Algorithms, David A. Bader
CSE6230: High Perf Parallel Comp, Jeffery Vetter
Spring 2011
CSE 6220: High Performance Computing, George Biros
CSE 6730: Modeling and Simulation: Fundamentals & Implementation, Richard Fujimoto
Summer 2011
ISYE 6414: Statistical Modeling and Regression Analysis, Kobi Abayomi
Fall 2011
MATH-6014: Graph Theory, Robin Thomas
Spring 2012
BIOL-7110: Macromolecular Modeling, Steve Harvey
BIOL-8802: Special Topics in Drug Discovery, Jeffrey Skolnick
CS-6290: High Performance Computer Architecture, Thomas Conte
Fall 2012
CSE-8803-MGA: Massive Graph Analysis, David A. Bader

Teaching

 
Fall 2011
CSE-4140,6140: Computational Science and Engineering (CSE) Algorithms, David A. Bader
Fall 2012
CSE-4140,6140: Computational Science and Engineering (CSE) Algorithms, Alberto Apostolico

Publication

 
[1] Zhaoming Yin, Jijun Tang, Stephen Schaeffer, David A. Bader Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes, International Conference on Computational Science, Barcelona, Spain, June, 2013.[pdf]
[2] Zhihui Du, Zhaoming Yin, Wenjie Liu, David A. Bader On Accelerating Iterative Algorithms with CUDA: A Case Study on Conditional Random Fields Training Algorithm for Biological Sequence AlignmentWorkshop on Data-mining of Next-Generation Sequencing Data (In conjunction with BIBM 2010) Hongkong, China, Dec 17, 2010 [pdf]
[3] Zhihui Du, Zhaoming Yin, David A Bader A Tile-based Parallel Viterbi Algorithm for Biological Sequence Alignment on GPU with CUDA Ninth IEEE International Workshop on High Performance Computational Biology (In conjunction with IPDPS 2010) Atlanta, GA, April 19, 2010 [pdf]
[4] Zhaoming Yin, Huarui Zhang Research on Chinese n-gram Statistical Rule and its application 14th Youth Conference on Communication (YCC) 2009, Dalian, China. (ISTP: 000270587500121) [pdf]

MISC

 
Reading List
This google site contains the link for my research related reading [www]
 
 
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