Publications

  1. A. Sarje and S. Aluru, ``All-pairs computations on many-core graphics processors,'' Parallel Computing, Vol. 39, pp. 79-93, 2013.
  2. A. Sarje, J. Zola and S. Aluru, "Accelerating Pairwise Computations on Cell Processors," IEEE Transactions on Parallel and Distributed Systems, Vol. 22, No. 1, pp. 69-77, 2011.
  3. A. Sarje, J. Zola and S. Aluru, "Pairwise computations on the Cell processor with applications in computational biology," In Scientific Computing with Multicore and Accelerators, Edited by Jack Dongarra, David A. Bader, and Jakub Kurzak, Chapman & Hall/CRC Computer and Information Science Series, Chapter 14, pp. 297-327, 2010.
  4. A. Sarje and S. Aluru, "Parallel Algorithms for Alignments on the Cell Broadband Engine," In Emerging Parallel Architectures for Bioinformatics Applications, Edited by B. Schmidt, Chapman & Hall/CRC Computer and Information Science Series, Chapter 4, pp. 59-84, 2010.
  5. A. Sarje and S. Aluru, "Parallel genomic alignments on the Cell broadband engine," IEEE Transactions on Parallel and Distributed Systems, Vol. 20, No. 11, pp. 1600-1610, 2009.
  6. J. Zola, A. Sarje and S. Aluru, "Constructing gene regulatory networks on clusters of Cell processors," 38th International Conference on Parallel Processing (ICPP), 2009.
  7. A. Janowczyk, S. Chandran and S. Aluru,"Fast, processor-cardinality agnostic PRNG with a tracking application," 6th Indian Conference on Computer Graphics, Vision and Image Processing, pp. 171-178, 2008.
  8. A. Sarje and S. Aluru,"Parallel biological sequence alignments on the Cell broadband engine," Proc. 22nd IEEE International Parallel and Distributed Processing Symposium (IPDPS), pp.1-11, 2008.

















Handbook of Computational Molecular Biology

Aluru's book cover