Most Cited Publications
 Bioinformatics

 X. Huang, J. Wang, S. Aluru, S.P. Yang and L. Hillier, "PCAP: A wholegenome assembly program," Genome Research, Vol. 13, pp. 21642170, 2003.
 A. Kalyanaraman, S. Aluru, S. Kothari, and V. Brendel, Efficient clustering of large EST data sets on parallel computers," Nucleic Acids Research, Vol. 31, No. 11, pp. 29632974, 2003.
 S.J. Emrich, S. Aluru, Y. Fu, T.J. Wen, M. Narayanan, L. Guo, D.A. Ashlock, and P.S. Schnable, "A Strategy for Assembling the Maize (Zea mays L.) Genome," Bioinformatics, Vol. 20, No. 2, pp. 140147, 2004.
 X. Yang, K. Dorman and S. Aluru, "Reptile: Representative tiling for short read error correction," Bioinformatics, Vol. 26, No. 10, pp. 25262533, 2010.
 A. Kalyanaraman and S. Aluru, "Efficient algorithms and software for detection of fulllength LTR retrotransposons," Journal of Bioinformatics and Computational Biology, Vol. 4, No. 2, pp. 197216, 2006.
 Biology

 P.S. Schnable, D. Ware,..., S. Aluru, R.A. Martienssen, S.W. Clifton, W.R. McCombie, R.A. Wing and R.K. Wilson,"The B73 maize genome: complexity, diversity and dynamics", Science (cover article), Vol. 326, Issue 5956, pp. 11121115, 2009.
 X. Yu, L. Li, J. Zola, M. Aluru, H. Ye, A. Foudree, H. Guo, S. Anderson, S. Aluru, P. Liu, S. Rodermel and Y. Yin, ``A brassinosteroid transcriptional network revealed by genomewide identification of BES1 target genes in Arabidopsis thaliana,'' The Plant Journal, Vol. 65, No. 4, pp. 634646, 2011.
 Y. Fu, S.J. Emrich, L. Guo, T.J. Wen, D. Ashlock, S. Aluru, and P.S. Schnable, Quality assessment of maize assembled genomic islands (MAGIs) and largescale experimental verification of predicted novel genes", Proceedings of the National Academy of Sciences USA, Vol. 102, No. 34, pp. 1228212287, 2005.
 S.J. Emrich, L. Li, T.J. Wen, M.D. YandeauNelson, Y. Fu, L. Guo, H.H. Chou, S. Aluru, D.A. Ashlock and P.S. Schanble, "Nearly identical paralogs (NIPs): implications for maize (Zea mays L.) genome evolution," Genetics, Vol. 175, pp. 429439, 2007. (featured in Science, Vol. 315, No. 5810, pp. 302 in Editor's Choice: Highlights of the recent literature)
 M. Mitreva, A.A. Elling, M. Dante, A.P. Kloek, A. Kalyanaraman, S. Aluru, S.W. Clifton, D.McK. Bird, T.J. Baum and J.P. McCarter, "A survey of SL1spliced transcripts from the rootlesion nematode Pratylenchus penetrans," Molecular Genetics and Genomics, Vol. 272, pp. 138148, 2004.
 Combinatorial Algorithms

 P. Ko and S. Aluru,"Space efficient linear time construction of suffix arrays," Journal of Discrete Algorithms, Vol. 3, No. 24, pp. 143156, 2005.
 B. Jackson, P.S. Schnable and S. Aluru, "Consensus genetic maps as median orders from inconsistent sources," ACM/IEEE Transactions on Computational Biology and Bioinformatics, Vol. 5, No. 2, pp. 161171, 2008.
 Parallel Algorithms/High Performance Computing

 M. Ott, J. Zola, S. Aluru and A. Stamatakis, "Largescale maximum likelihoodbased phylogenetic analysis on the IBM Blue Gene/L," Proc. ACM/IEEE Supercomputing Conference(SC), 2007.(best paper finalist).
 S. Aluru, N. Futamura and K. Mehrotra, "Parallel biological sequence comparison using prefix computations," Journal of Parallel and Distributed Computing, Vol. 63, No. 3, pp. 264272, 2003.
 S. Aluru and F. Sevilgen,"Parallel domain decomposition and load balancing using spacefilling curves," Proc. 4th IEEE International Conference on High Performance Computing, pp. 230235, 1997.
 S. Rajko and S. Aluru,"Space and time optimal parallel sequence alignments," IEEE Transactions on Parallel and Distributed Systems, Vol. 15, No. 12, pp. 10701081, 2004.
 S. Aluru, G.M. Prabhu and J. Gustafson, "A random number generator for parallel computers," Parallel Computing, Vol. 18, pp. 839847, 1992.
 Scientific Computing

 S. Aluru and F. Sevilgen,"Parallel domain decomposition and load balancing using spacefilling curves," Proc. 4th IEEE International Conference on High Performance Computing, pp. 230235, 1997.
 S. Aluru, "The Fast Multipole Nbody Algorithm is not Order N," SIAM Journal on Scientific Computing, Vol. 17, No. 3, pp. 773776, 1996.
 S. Aluru, G.M. Prabhu and J. Gustafson, "A random number generator for parallel computers," Parallel Computing, Vol. 18, pp. 839847, 1992.
 B. Hariharan, S. Aluru and B. Shanker, "A scalable parallel fast multipole method for analysis of scattering from perfect electrically conducting surfaces," Proc. IEEE/ACM Supercomputing Conference, www.sc2002.org, 2002.
 B. Hariharan and S. Aluru, "Efficient parallel algorithms and software for compressed octrees with applications to hierarchical methods," Parallel Computing, Vol. 31, pp. 311331, 2005.